SNP Profiles of EET 45 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
1._GC-04-058-4-09	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
2._GC-04-058-4-09	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
3._GC-04-057-4-08	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
4._GC-04-057-4-08	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
5._GC-04-057-4-08	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
6._GC-04-057-4-08	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
7._GC-03-017-2-06	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
8._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
9._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
10._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
11._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
12._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
13._EET_45_[ECU]	CC	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
14._GC-04-057-4-08	_	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
15._EET_45_[ECU]	_	AA	CG	CC	CT	AC	CT	GG	TT	CT	AA	AG	CC	AA
16._EET_45_[ECU]	CC	AA	CG	CT	CT	CC	CT	GG	TT	_	AA	AG	CC	AA
17._EET_45_[ECU]	CC	AA	CG	CT	CT	CC	CT	GG	TT	_	AA	AG	CC	AA
18._GC-03-017-2-06	CT	AG	CG	CC	CT	CC	CT	GT	CT	CT	AA	AG	CC	AG
19._EET_45_[ECU]	CT	AG	CG	CC	CT	CC	CT	GT	CT	CT	AA	AG	CC	AG
20._EET_45_[ECU]	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CT	AG
21._GC-03-017-2-06	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CT	AG
22._GC-04-058-4-09	CT	AG	CG	CT	TT	AA	CC	GG	TT	CT	AA	AA	CT	AA
23._EET_45_[ECU]	CT	AG	CG	CT	TT	AA	CC	GG	TT	CT	AA	AA	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
1._GC-04-058-4-09	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
2._GC-04-058-4-09	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
3._GC-04-057-4-08	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
4._GC-04-057-4-08	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
5._GC-04-057-4-08	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
6._GC-04-057-4-08	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
7._GC-03-017-2-06	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
8._EET_45_[ECU]	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
9._EET_45_[ECU]	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
10._EET_45_[ECU]	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
11._EET_45_[ECU]	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
12._EET_45_[ECU]	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
13._EET_45_[ECU]	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
14._GC-04-057-4-08	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
15._EET_45_[ECU]	CT	TT	CG	CT	CT	CG	GT	AA	TT	CC	CG	GG	CT	AA
16._EET_45_[ECU]	CT	TT	CG	CT	CT	CG	GT	AG	TT	CC	CG	GG	CT	AA
17._EET_45_[ECU]	CT	TT	CG	CT	CT	CG	GT	AG	TT	AA	CG	GG	CT	AA
18._GC-03-017-2-06	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CG	GT	CT	AC
19._EET_45_[ECU]	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	CG	GT	CT	AC
20._EET_45_[ECU]	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	GG	GT	CT	AC
21._GC-03-017-2-06	CT	AT	CG	CT	CT	CG	GG	AG	TT	AC	GG	GT	CT	AC
22._GC-04-058-4-09	CT	AA	GG	TT	CC	CG	TT	GG	CT	AC	CG	GT	CT	CC
23._EET_45_[ECU]	CT	AA	GG	TT	CC	CG	TT	GG	CT	AC	CG	GT	CT	CC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
1._GC-04-058-4-09	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
2._GC-04-058-4-09	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
3._GC-04-057-4-08	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
4._GC-04-057-4-08	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
5._GC-04-057-4-08	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
6._GC-04-057-4-08	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
7._GC-03-017-2-06	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
8._EET_45_[ECU]	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
9._EET_45_[ECU]	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
10._EET_45_[ECU]	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
11._EET_45_[ECU]	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
12._EET_45_[ECU]	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
13._EET_45_[ECU]	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
14._GC-04-057-4-08	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
15._EET_45_[ECU]	GG	AA	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
16._EET_45_[ECU]	GG	_	AA	CC	AG	_	CC	GT	CC	AA	CG	X_X	X_X	X_X
17._EET_45_[ECU]	GG	_	AA	CC	AG	CC	CC	GT	CC	AA	CG	X_X	X_X	X_X
18._GC-03-017-2-06	AG	AG	AA	CC	AA	CC	AC	GT	CC	AT	CG	X_X	X_X	X_X
19._EET_45_[ECU]	AG	AG	AA	CC	AA	CC	AC	GT	CC	AT	CG	X_X	X_X	X_X
20._EET_45_[ECU]	AG	AG	AA	CC	AA	CC	AC	GT	AC	AT	CG	X_X	X_X	X_X
21._GC-03-017-2-06	AG	AG	AA	CC	AA	CC	AC	GT	AC	AT	CG	X_X	X_X	X_X
22._GC-04-058-4-09	AG	GG	AT	CT	GG	CG	AC	GG	AC	AT	GG	X_X	X_X	X_X
23._EET_45_[ECU]	AG	GG	AT	CT	GG	CG	AC	GG	AC	AT	GG	X_X	X_X	X_X

Input profile: EET_45_[ECU]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4408 5

Dapeng Zhang, 2016

1._EET_45_[ECU] GC-04-058-4-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

2._EET_45_[ECU] GC-04-058-4-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

3._EET_45_[ECU] GC-04-057-4-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._EET_45_[ECU] GC-04-057-4-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._EET_45_[ECU] GC-04-057-4-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._EET_45_[ECU] GC-04-057-4-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._EET_45_[ECU] GC-03-017-2-06

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._EET_45_[ECU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3206 1 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._EET_45_[ECU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4408 1

Dapeng Zhang, 2016

10._EET_45_[ECU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4408 2

Dapeng Zhang, 2016

11._EET_45_[ECU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4408 7

Dapeng Zhang, 2016

12._EET_45_[ECU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4409 6

Dapeng Zhang, 2016

13._EET_45_[ECU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4409 8

Dapeng Zhang, 2016

14._EET_45_[ECU] GC-04-057-4-08

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

15._EET_45_[ECU]

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4408 8

Dapeng Zhang, 2016

16._EET_45_[ECU]

95.8 %
36 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

17._EET_45_[ECU]

93.2 %
37 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 33 34_36

Dapeng Zhang, 2016

18._EET_45_[ECU] GC-03-017-2-06

78.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

19._EET_45_[ECU]

78.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3206 3 > FP

Dapeng Zhang, 2016

20._EET_45_[ECU]

73.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3206 2 > FP

Dapeng Zhang, 2016

21._EET_45_[ECU] GC-03-017-2-06

73.1 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

22._EET_45_[ECU] GC-04-058-4-09

57.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

23._EET_45_[ECU]

57.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4409 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25